IGV 2.10.3 - Jul 2021#
- Fixed a problem with displaying the popup information in alignment tracks - no details were shown for paired-end alignments when View as pairs was enabled. (Git issue #1003)
IGV 2.10.2 - Jul 2021#
Bug fixes:
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Fixed a problem with displaying extra large chromosomes (1024^3 bp). (Git issue #977 - initial issue)
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Fixed a problem with loading BAM files that do not store read sequence. (Git issue #977 - part 2)
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Tracks generated via Tools > Find Motif are now correctly saved in sessions. (Git issue #988)
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Fixed a problem in alignment tracks that caused the right-click popup menu command Copy read details to the clipboard to fail.
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Fixed a problem that sometimes occurred when reloading tracks (via File > Reload Tracks) if using a local reference genome.
IGV 2.10.0 - Jun 2021#
New features:
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Support for displaying RNA and DNA base modification tags in BAM files, described in samtools/hts-specs issue #362. These tags are now implemented by several Oxford Nanopore tools that detect base modifications, including Megalodon and Guppy. (Git issue #945)
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Allow filtering of feature/annotation tracks based on attributes, via Tracks > Filter Tracks. (Git issue #941)
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New batch command:
sortByAttribute
Bug fixes:
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Couldn't open .igv files from pre-signed Amazon S3 links. (Git issue #922)
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Tracks were not autoscaling when loading from a port or batch script. (Git issue #925)
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Changing to autoscale or group autoscale on numeric tracks would not take effect until the user did something to cause a redraw, for example, pan or zoom the view.
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Fixed issue with gene track translations. When the translation table was changed to "vertebrate mitochondrial" and then back to "standard", the translations in the RefSeq track were incorrect. (Git issue #923)