IGV 2.10.3 - Jul 2021#

Fixed a problem with displaying the popup information in alignment tracks - no details were shown for paired-end alignments when View as pairs was enabled. (Git issue #1003)

IGV 2.10.2 - Jul 2021#

Bug fixes:

Fixed a problem with displaying extra large chromosomes (1024^3 bp). (Git issue #977 - initial issue)
Fixed a problem with loading BAM files that do not store read sequence. (Git issue #977 - part 2)
Tracks generated via Tools > Find Motif are now correctly saved in sessions. (Git issue #988)
Fixed a problem in alignment tracks that caused the right-click popup menu command Copy read details to the clipboard to fail.
Fixed a problem that sometimes occurred when reloading tracks (via File > Reload Tracks) if using a local reference genome.

New features:

Support for displaying RNA and DNA base modification tags in BAM files, described in samtools/hts-specs issue #362. These tags are now implemented by several Oxford Nanopore tools that detect base modifications, including Megalodon and Guppy. (Git issue #945)
Allow filtering of feature/annotation tracks based on attributes, via Tracks > Filter Tracks. (Git issue #941)
New batch command: sortByAttribute

Bug fixes:

Couldn't open .igv files from pre-signed Amazon S3 links. (Git issue #922)
Tracks were not autoscaling when loading from a port or batch script. (Git issue #925)
Changing to autoscale or group autoscale on numeric tracks would not take effect until the user did something to cause a redraw, for example, pan or zoom the view.
Fixed issue with gene track translations. When the translation table was changed to "vertebrate mitochondrial" and then back to "standard", the translations in the RefSeq track were incorrect. (Git issue #923)