IGV 2.14.1 - Sep 2022#
Updates and bug fixes:
- Improvements to alignment sorting.
- New coloring option for alignments with base modification: "Color by base modification (all C)". Color Cytosine bases by most probable modification when specified by MM/ML tags.
- Bug fix: Issues with alignment option "Color by base modification (5mC)" in the presence of "5hmC" modifications.
- Bug fix: View as pairs broken if combined with "Color by ZMW".
IGV 2.14.0 - Aug 2022#
New options for displaying sequence alignments:
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Color by base modification (5mC) specified with MM/ML tags in the BAM file. For more details, see the page on base modifications in the alignent tracks section in the User Guide.
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Shade by mapping quality. (Git Issue 1110)
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Group by mapping quality. (Git Issue 1112)
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Sort by aligned read length. (Git Issue 1159)
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When grouping alignments by an attribute, the display order of the groups can now be reversed by selecting Group alignments by > Reverse group sorting in the right-click popup menu. (Git Issue #1106)
Other updates and bug fixes:
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The IGV application no longer checks to for new versions. (Git Issue #1117)
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Bug fix: Combined data tracks could not be generated via Tools > Combine Tracks or restored from previously saved sessions.
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Bug fix: Tracks generated via the BLAT and Motif finder tools were not being restored when a saved session file was loaded.
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Bug fix: Sashimi plots displayed a maximum of one sample.
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Bug fix: Saved .png images displayed a black background with black text for alignment track group labels. A white background is now used to match the onscreen appearance. (Git Issue #1172)
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Bug fix: TDF files failed to load via URL when the URL had a query string. (Git Issue #1168)