Example Sessions

Segmented Copy Number#

Segmented copy number (SEG file) from glioblastoma multiforme (GBM) samples and accompanying sample attribute information. Open session in IGV-Web.

1000 Genomes Variants#

A VCF file of variants and genotypes from 1000 Genomes and accompanying sample attribute information. Open session in IGV-Web.

Base Modifications#

PacBio long-read sequencing data; colored by base modifications (5mC and 6mA). Open session in IGV-Web.

Strutural Variants#

Sequencing data of the SK-BR-3 breast cancer cell line and a track indicating translocations. Data courtesy of the Schatz lab from Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of the SKBR3 breast cancer cell line, Nattestad et al. (2017) Genome Research doi: 10.1101/gr.231100.117.

xQTL#

xQTL tracks. Open session in IGV-Web.

To highlight eqtls and associated phenotypes try entering the following from Search for... in the "B cell eQTL" track gear menu