# Hosted genomes list. Tab delimited file with 3 columns Name (for menu), url to .genome or .json file, and genome ID. A. gambia (Pest AgamP3) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/AgamP3.genome AgamP3 A. nidulans (4.1) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/anidulans_4.1.genome anidulans_4.1 A. thaliana (TAIR 10) https://s3.amazonaws.com/igv.org.genomes/tair10/tair10.json tair10 Autographa californica MNPV https://s3.amazonaws.com/igv.broadinstitute.org/genomes/NC_001623.genome NC_001623 Bacillus Subtilis str. 168 https://s3.amazonaws.com/igv.broadinstitute.org/genomes/NC_000964.genome NC_000964 Banana (M. Balbisiana PKWv1) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/MusaBalbisianaPKWv1.genome MusaBalbisianaPKWv1 Banana (Musa acuminata) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/MusaAcuminata.genome MusaAcuminata C. alibcans (SC5314 A21) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/ca21.genome ca21 C. elegans (WS241) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/ws241.genome ws241 C. elegans (WS235) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/ws235.genome ws235 C. elegans (WS245) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/WS245.genome WS245 C. elegans (ce10) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/ce10.genome ce10 C. elegans (ce11) https://s3.amazonaws.com/igv.org.genomes/ce11/ce11.json ce11 Chicken (galGal4) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/galGal4.genome galGal4 Chicken (galGal5) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/galGal5.genome galGal5 Chicken (GRCg6a / galGal6) https://s3.amazonaws.com/igv.org.genomes/galGal6/galGal6.json galGal6 Gallus gallus (GCF_016699485.2) https://igv-genepattern-org.s3.amazonaws.com/genomes/GCF_016699485.2/GCF_016699485.2.json GCF_016699485.2 Chimp (panTro3) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/panTro3.genome panTro3 Chimp (panTro4) https://s3.amazonaws.com/igv.org.genomes/panTro4/panTro4.json panTro4 Chimp (panTro5) https://s3.amazonaws.com/igv.org.genomes/panTro5/panTro5.genome panTro5 Chimp (panTro6) https://s3.amazonaws.com/igv.org.genomes/panTro6/panTro6.genome panTro6 Coprinopsis cinerea okayama7#130 (GCA_000182895.1) https://igv-genepattern-org.s3.amazonaws.com/genomes/GCA_000182895.1/GCA_000182895.1_dt.json GCA_000182895.1 Cat (felCat5) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/felCat5.genome felCat5 Cow (bosTau7) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/bosTau7.genome bosTau7 Cow (bosTau8) https://s3.amazonaws.com/igv.org.genomes/bosTau8/bosTau8.json bosTau8 Cow (bosTau9) https://s3.amazonaws.com/igv.org.genomes/bosTau9/bosTau9.json bosTau9 D. melanogaster (dm6) https://s3.amazonaws.com/igv.org.genomes/dm6/dm6.json dm6 D. melanogaster (dm3) https://s3.amazonaws.com/igv.org.genomes/dm3/dm3.json dm3 D. melanogaster (r5.9) https://s3.amazonaws.com/igv.org.genomes/dmel_r5.9/dmel_r5.9.json dmel_r5.9 Dog (canFam3) https://s3.amazonaws.com/igv.org.genomes/canFam3/canFam3.json canFam3 Dog (UU_Cfam_GSD_1.0/canFam4) https://s3.amazonaws.com/igv.org.genomes/canFam4/canFam4.json canFam4 Dog (canFam5) https://s3.amazonaws.com/igv.org.genomes/canFam5/canFam5.json canFam5 E. coli K-12 MG1655 (NC_000913.2) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/NC_000913.2.genome NC_000913.2 E. coli K-12 (NC_000913.3) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/NC_000913.3.gbk NC_000913.3 Ferret (MusPutFur1.0) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/MusPutFur1.0.genome MusPutFur1.0 Francisella tularensis (NC_008601) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/NC_008601.gbk NC_008601 Glycine max (v8.0) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/gmax8.genome gmax8 Glycine max (Wm82.a2.v1) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/gmax10.genome gmax10 Helicobacter hepaticus https://s3.amazonaws.com/igv.broadinstitute.org/genomes/NC_004917.genome NC_004917 HIV-1 https://s3.amazonaws.com/igv.broadinstitute.org/genomes/NC_001802.genome NC_001802 HIV-2 https://s3.amazonaws.com/igv.broadinstitute.org/genomes/NC_001722.genome NC_001722 Human (1kg, b37+decoy) https://s3.amazonaws.com/igv.org.genomes/1kg_v37/b37_1kg.json 1kg_v37 Human Adenovirus C https://s3.amazonaws.com/igv.broadinstitute.org/genomes/NC_001405.genome NC_001405 Human Herpesvirus 4, Type 1 https://s3.amazonaws.com/igv.broadinstitute.org/genomes/HHV4_Type1.genome HHV4_Type1 Human Herpesvirus 4, Type 2 https://s3.amazonaws.com/igv.broadinstitute.org/genomes/HHV4_Type2.genome HHV4_Type2 Human (T2T CHM13-v2.0/hs1) https://igv-genepattern-org.s3.amazonaws.com/genomes/hs1/chm13v2.0.json hs1 Human (T2T CHM13-v1.1) https://s3.amazonaws.com/igv.org.genomes/t2t-chm13-v1.1/chm13v1.1.json chm13v1.1 Human (hg18) https://s3.amazonaws.com/igv.org.genomes/hg18/hg18.json hg18 Human (hg19) https://s3.amazonaws.com/igv.org.genomes/hg19/hg19.json hg19 Human (hg38) https://igv-genepattern-org.s3.amazonaws.com/genomes/hg38/hg38.json hg38 Human (hg38 1kg/GATK) https://s3.amazonaws.com/igv.org.genomes/hg38_1kg/hg38_1kg.json hg38_1kg Human Mito (NC_012920) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/NC_012920.1.gbk NC_012920 Human respiratory synctial virus https://s3.amazonaws.com/igv.broadinstitute.org/genomes/M74568.genome M74568 Macaca fascicularis (CE_1.0) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/CE_1.0.genome CE_1.0 Macaca fascicularis (5.0) https://s3.amazonaws.com/igv.org.genomes/Macaca_fascicularis_5.0/Macaca_fascicularis_5.0.genome GCF_000364345.1 Macaca fascicularis 6.0 (GCA_011100615.1) https://s3.amazonaws.com/igv.org.genomes/GCA_011100615.1/GCA_011100615.1.json GCA_011100615.1 Mouse (129S1/SvImJ) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/SvImJ.genome 129S1/SvImJ Mouse mm10 https://s3.amazonaws.com/igv.org.genomes/mm10/mm10.json mm10 Mouse mm8 https://s3.amazonaws.com/igv.broadinstitute.org/genomes/mm8.genome mm8 Mouse mm9 https://s3.amazonaws.com/igv.org.genomes/mm9/mm9.json mm9 Mouse mm39 https://s3.amazonaws.com/igv.org.genomes/mm39/mm39.json mm39 Mycobacterium TB (CD1551) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/NC_002755.genome NC_002755 N. Meningitidis (FAM18) https://s3.amazonaws.com/igv.broadinstitute.org/test/genomes/NC_008767.genome NC_008767 N. Meningitidis (MC58) https://s3.amazonaws.com/igv.broadinstitute.org/test/genomes/NC_003112.genome NC_003112 N. Meningitidis (Z2491) https://s3.amazonaws.com/igv.broadinstitute.org/test/genomes/NC_003116.genome NC_003116 P. falciparum 3D7 (V9.0) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/Pf3D7_v9.0.genome Pf3D7_v9.0 Plasmodium (3D7 V24) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/PlasmoDB_24.genome Plasmodium_24 Rabbit (oryCun2.0) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/oryCun2.0.genome oryCun2.0 Rat (rn5) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/rn5.genome rn5 Rat (rn6) https://s3.amazonaws.com/igv.org.genomes/rn6/rn6.json rn6 Rat (rn7) https://s3.amazonaws.com/igv.org.genomes/rn7/rn7.json rn7 Rhesus (rheMac3) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/rheMac3.genome rheMac3 Rhesus (rheMac8) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/rheMac8.genome rheMac8 Rhesus (Mmul_10/rheMac10) https://s3.amazonaws.com/igv.org.genomes/rheMac10/rheMac10.genome rheMac10 S. cerevisiae (Y55) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/Y55.genome Y55 S. cerevisiae (sacCer3) https://s3.amazonaws.com/igv.org.genomes/sacCer3/sacCer3.json sacCer3 S. pombe (ASM294v2) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/ASM294v2.genome ASM294v2 S. sclerotiorum (sclerotiorum) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/sclerotiorum.genome sclerotiorum Salmonella enterica str. 14028S https://s3.amazonaws.com/igv.broadinstitute.org/genomes/NC_016856.genome NC_016856 Salmo salar (ICSASG_v2) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/GCF_000233375.1.genome GCF_000233375.1 Sheep (Ovis Aries v3.1) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/oviAri3.genome oviAri3 Sus Scrofa (Sscrofa10.2/susScr3) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/susScr3.genome susScr3 T. brucei (427 v4.2) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/tb427_4.2.genome tb427_4.2 T. brucei (927 v5.0) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/tbrucei927_5.0.genome tbrucei927_5.0 T. brucei gambiense https://s3.amazonaws.com/igv.broadinstitute.org/genomes/tbgambi.genome tbgambi Tomato (2.31) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/SL2.31.genome SL2.31 Tomato (2.40) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/SL2.40.genome SL2.40 Trout (CCAF000000000) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/CCAF000000000.genome CCAF000000000 V. vitifera https://s3.amazonaws.com/igv.broadinstitute.org/genomes/vvinifera.genome vvitifera X. tropicalis v9.0 https://s3.amazonaws.com/igv.broadinstitute.org/genomes/xenTro9.genome xenTro9 X. laevis (7.1) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/laevis_7.1.genome laevis_7.1 Zebrafish (GRCz10/danRer10) https://s3.amazonaws.com/igv.org.genomes/danRer10/danRer10.json danRer10 Zebrafish (GRCz11/danRer11) https://s3.amazonaws.com/igv.org.genomes/danRer11/danRer11.json danRer11 Zea mays (AGPv3.31) https://s3.amazonaws.com/igv.broadinstitute.org/genomes/AGPv3.31.genome AGPv3.31 C. reinhardtii (CC-503 v5.5) https://s3.amazonaws.com/igv.org.genomes/Creinhardtii_CC-503_v5.0/2019-03-21_Creinhardtii_CC-503_v5.5.genome 2019-03-21_Creinhardtii_CC-503_v5.5 C. reinhardtii (CC-503 v5.6) https://s3.amazonaws.com/igv.org.genomes/C.reinhardtii_CC-503_v5.6+/2019-03-21_Creinhardtii_CC-503_v5.6.genome 2019-03-21_Creinhardtii_CC-503_v5.6 C. reinhardtii (CC-503 v5.6 Cp+Mt v4.4) https://s3.amazonaws.com/igv.org.genomes/Creinhardtii_CC-503_v5.6/2019-03-21_Creinhardtii_CC-503_v5.6_Cp%2BMt_v4.4.genome 2019-03-21_Creinhardtii_CC-503_v5.6_Cp+Mt_v4.4 Ixodes scapularis JCVI_ISG_i3_1.0 (GCA_000208615.1) https://s3.amazonaws.com/igv.org.genomes/tick/GCA_000208615.1/GCA_000208615.1.genome GCA_000208615.1 Ixodes scapularis ISE6_asm2.2_deduplicated (GCA_002892825.2) https://s3.amazonaws.com/igv.org.genomes/tick/GCA_000208615.1/GCA_000208615.1.genome GCA_002892825.2 SARS-CoV-2 https://s3.amazonaws.com/igv.org.genomes/ASM985889v3/ASM985889v3.json ASM985889v3 S. pombe (ASM294v2) https://s3.amazonaws.com/igv.org.genomes/ASM294v2/ASM294v2.json ASM294v2 Gorilla (gorGor4) https://s3.amazonaws.com/igv.org.genomes/gorGor4/gorGor4.json gorGor4 Gorilla (gorGor6) https://s3.amazonaws.com/igv.org.genomes/gorGor6/gorGor6.json gorGor6 Bonobo (MPI-EVA panpan1.1/panPan2) https://s3.amazonaws.com/igv.org.genomes/panPan2/panPan2.json panPan2 Pig (SGSC Sscrofa11.1/susScr11) https://s3.amazonaws.com/igv.org.genomes/susScr11/susScr11.json susScr11 S. purpuratus (Baylor 2.1/strPur2) https://s3.amazonaws.com/igv.org.genomes/strPur2/strPur2.json strPur2 S. purpuratus (Spur5.0) https://s3.amazonaws.com/igv.org.genomes/Spur5.0/Spur5.0.json Spur5.0 P. miniata (Pmin3.0) https://s3.amazonaws.com/igv.org.genomes/Pmin3.0/Pmin3.0.json Pmin3.0 L. variegatus (Lvar3.0) https://s3.amazonaws.com/igv.org.genomes/Lvar3.0/Lvar3.0.json Lvar3.0 A. planci (Aplan1.0) https://s3.amazonaws.com/igv.org.genomes/Aplan1.0/Aplan1.0.json Aplan1.0 A. japonica (Ajap1.0) https://s3.amazonaws.com/igv.org.genomes/Ajap1.0/Ajap1.0.json Ajap1.0 A. rubens (Arub1.3) https://s3.amazonaws.com/igv.org.genomes/Arub1.3/Arub1.3.json Arub1.3 O. sativa IRGSP-1.0 (GCF_001433935.1) https://s3.amazonaws.com/igv.org.genomes/GCF_001433935.1/GCF_001433935.1.json GCF_001433935.1 UNKNOWN