{
"id": "hs1",
"blatDB": "hub_3671779_hs1",
"name": "Human (T2T CHM13-v2.0/hs1)",
"fastaURL": "https://s3.amazonaws.com/igv.org.genomes/chm13v2.0/chm13v2.0.fa",
"indexURL": "https://s3.amazonaws.com/igv.org.genomes/chm13v2.0/chm13v2.0.fa.fai",
"cytobandBbURL": "https://hgdownload.soe.ucsc.edu/gbdb/hs1/cytoBandMapped/cytoBandMapped.bb",
"aliasURL": "https://hgdownload.soe.ucsc.edu/goldenPath/hs1/bigZips/hs1.chromAlias.txt",
"twoBitURL": "https://hgdownload.soe.ucsc.edu/goldenPath/hs1/bigZips/hs1.2bit",
"twoBitBptURL": "https://hgdownload.soe.ucsc.edu/goldenPath/hs1/bigZips/hs1.2bit.bpt",
"chromSizesURL": "https://hgdownload.soe.ucsc.edu/goldenPath/hs1/bigZips/hs1.chrom.sizes.txt",
"chromosomeOrder": "chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX,chrY",
"hubs": [
"https://hgdownload.soe.ucsc.edu/gbdb/hs1/hubs/hub.txt"
],
"tracks": [
{
"name": "RefSeq Select",
"type": "annotation",
"format": "biggenepred",
"url": "https://hgdownload.soe.ucsc.edu/gbdb/hs1/ncbiRefSeq/ncbiRefSeqSelectCurated.bb",
"trixURL": "https://hgdownload.soe.ucsc.edu/gbdb/hs1/ncbiRefSeq/ncbiRefSeqSelectCurated.ix",
"visibilityWindow": -1,
"order":1000000
},
{
"id": "catLiftOffGenesV1",
"name": "CAT/Liftoff Genes",
"format": "bigbed",
"description": " CAT + Liftoff Gene Annotations",
"url": "https://hgdownload.soe.ucsc.edu/hubs/GCA/009/914/755/GCA_009914755.4/bbi/GCA_009914755.4_T2T-CHM13v2.0.catLiftOffGenesV1/catLiftOffGenesV1.bb",
"displayMode": "EXPANDED",
"height": 200,
"visibilityWindow": -1,
"supportsWholeGenome": false,
"order": 1000000
},
{
"id": "augustus",
"name": "Augustus",
"format": "bigbed",
"description": " Augustus Gene Predictions",
"url": "https://hgdownload.soe.ucsc.edu/hubs/GCA/009/914/755/GCA_009914755.4/bbi/GCA_009914755.4_T2T-CHM13v2.0.augustus.bb",
"displayMode": "EXPANDED",
"color": "180,0,0",
"height": 200,
"visibilityWindow": -1,
"supportsWholeGenome": false,
"order": 1000001
},
{
"name": "Genes",
"format": "bed",
"url": "https://igv.org/genomes/data/hs1/chm13v2.0_geneLocations.short.bed.gz",
"hidden": true,
"searchable": true
}
]
}